Structure of Human Polyomavirus 9 VP1 pentamer in complex with N-glycolylneuraminic acid containing 3'-sialyllactosamine

PDB ID: 4POT
Gene source organism: Human polyomavirus 9
Expression organism: Escherichia coli Deposition date: 2014-02-26
Classification: VIRAL PROTEIN
Keywords: jelly roll fold, capsid formation, receptor interaction, carbohydrate, sialyloligosaccharide, viral coat protein, VIRAL PROTEIN
Technique: X-RAY DIFFRACTION
Assembly: 2
Resolution: 2.1
R-value: 0.18394
Metal site idBound amino acidsBound ligands IDs
4POT-CA-1 E1S1 GLU F.49 HOH G.596 HOH G.692 SER G.217
4POT-CA-2 E1S1 GLU G.49 HOH H.620 HOH H.658 SER H.217
4POT-CA-3 E1S1 GLU H.49 HOH H.647 HOH H.732 HOH I.728 SER I.217
4POT-CA-4 E1S1 GLU I.49 HOH J.529 SER J.217
4POT-CA-5 E1S1 GLU J.49 HOH F.580 HOH F.627 HOH F.628 SER F.217