Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation

PDB ID: 6WXF
Gene source organism: Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3])
Expression organism: Spodoptera frugiperda Deposition date: 2020-05-10
Classification: VIRAL PROTEIN
Keywords: non-enveloped virus, viral particle, entry, membrane-penetration, rotavirus, VP4, VP5*, VP8*, intermediate, VIRAL PROTEIN
Technique: ELECTRON MICROSCOPY
Assembly: 1
Resolution: None
R-value: None
Metal site idBound amino acidsBound ligands IDs
6WXF-CA-1 D3 ASP a.228 ASP a.231 ASP b.301
6WXF-CA-2 D1G1T1 ASP b.95 GLY a.206 THR a.214
6WXF-CA-3 D3V1 ASP b.228 ASP b.231 ASP c.301 VAL b.229
6WXF-CA-4 D1E1G1 ASP c.95 GLU b.216 GLY b.206
6WXF-CA-5 D3Q1V1 ASP a.301 ASP c.228 ASP c.231 GLN c.177 VAL c.229
6WXF-CA-6 D1G1T1 ASP a.95 GLY c.206 THR c.214
6WXF-CA-7 D3Q1 ASP d.228 ASP d.231 ASP e.301 GLN d.177
6WXF-CA-8 D1G1T1 ASP e.95 GLY d.206 THR d.214
6WXF-CA-9 D3 ASP e.228 ASP e.231 ASP f.301
6WXF-CA-10 D1G1T1 ASP f.95 GLY e.206 THR e.214
6WXF-CA-11 D3Q1 ASP d.301 ASP f.228 ASP f.231 GLN f.177
6WXF-CA-12 D1G1T1 ASP d.95 GLY f.206 THR f.214
6WXF-CA-13 D3Q1V1 ASP g.228 ASP g.231 ASP h.301 GLN g.177 VAL g.229
6WXF-CA-14 D3 ASP h.228 ASP h.231 ASP i.301
6WXF-CA-15 D1T1 ASP i.95 THR h.214
6WXF-CA-16 D3Q1V1 ASP g.301 ASP i.228 ASP i.231 GLN i.177 VAL i.229
6WXF-CA-17 D1E1G1T1 ASP g.95 GLU i.216 GLY i.206 THR i.214
6WXF-CA-18 D3 ASP j.228 ASP j.231 ASP k.301
6WXF-CA-19 D1G1 ASP k.95 GLY j.206
6WXF-CA-20 D3Q1 ASP k.228 ASP k.231 ASP l.301 GLN k.177
6WXF-CA-21 D1G1T1 ASP l.95 GLY k.206 THR k.214
6WXF-CA-22 D3Q1V1 ASP j.301 ASP l.228 ASP l.231 GLN l.177 VAL l.229
6WXF-CA-23 D1G1T1 ASP j.95 GLY l.206 THR l.214
6WXF-CA-24 D3Q1V1 ASP m.228 ASP m.231 ASP n.301 GLN m.177 VAL m.229
6WXF-CA-25 D1G1T1 ASP n.95 GLY m.206 THR m.214
6WXF-CA-26 D3Q1 ASP n.228 ASP n.231 ASP o.301 GLN n.177
6WXF-CA-27 D1E1G1T1 ASP o.95 GLU n.216 GLY n.206 THR n.214
6WXF-CA-28 D3Q1 ASP m.301 ASP o.228 ASP o.231 GLN o.177
6WXF-CA-29 D1G1T1 ASP m.95 GLY o.206 THR o.214
6WXF-CA-30 D3Q1V1 ASP p.228 ASP p.231 ASP q.301 GLN p.177 VAL p.229
6WXF-CA-31 D1G1T1 ASP q.95 GLY p.206 THR p.214
6WXF-CA-32 D3V1 ASP q.228 ASP q.231 ASP r.301 VAL q.229
6WXF-CA-33 D1G1 ASP r.95 GLY q.206
6WXF-CA-34 D3Q1 ASP p.301 ASP r.228 ASP r.231 GLN r.177
6WXF-CA-35 D1E1T1 ASP p.95 GLU r.216 THR r.214