Structure of Isopropylmalate dehydrogenase from Thermus thermophilus - complex with NADH and Mn

PDB ID: 2Y42
Metal site ID: 2Y42-MN-2
Bound amino acids or nucleotide residues: D3
Group identifier: D3
Is homomeric: True
Amino acid or nucleotide residue IDs: ASP A.217 ASP B.241 ASP B.245
All ligands IDs: ASP A.217 ASP B.241 ASP B.245 BCN B.501
Number of coordinating amino acids or nucleotide residues: 3
Number of coordinating ligands: 4
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 3WZY-MG-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
2Y40-MN-1D3 ASP A.241 ASP A.245 ASP B.217 HOH A.2036 HOH A.2045
2Y40-MN-2D3 ASP A.217 ASP B.241 ASP B.245 HOH B.2025 HOH B.2026
2Y41-MN-1D2 ASP A.241 ASP B.217 HOH A.2118 HOH A.2119 IPM A.800
2Y41-MN-2D2 ASP A.217 ASP B.241 HOH B.2080 HOH B.2081 IPM B.800
2Y42-MN-1D3 ASP A.241 ASP A.245 ASP B.217 BCN A.501
2Y42-MN-2D3 ASP A.217 ASP B.241 ASP B.245 BCN B.501
3VKZ-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.501 HOH A.539 IPM A.401
3VKZ-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.501 HOH A.539 IPM A.401
3VL2-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.504 HOH A.511 IPM A.401
3VL2-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.504 HOH A.511 IPM A.401
3VL3-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.503 HOH A.585 IPM A.401
3VL3-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.503 HOH A.585 IPM A.401
3VL4-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.503 HOH A.552 IPM A.401
3VL4-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.503 HOH A.552 IPM A.401
3VL6-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.502 HOH A.637 IPM A.401
3VL6-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.502 HOH A.637 IPM A.401
3VL7-CA-1D3 ASP A.225 ASP A.249 ASP A.253 HOH A.518 HOH A.600 IPM A.401
3VL7-CA-2D3 ASP A.225 ASP A.249 ASP A.253 HOH A.518 HOH A.600 IPM A.401
3WZV-MG-1D2 ASP A.225 ASP A.249 HOH A.510 HOH A.685 IPM A.401
3WZV-MG-2D2 ASP A.225 ASP A.249 HOH A.510 HOH A.685 IPM A.401
3WZW-MG-1D2 ASP A.225 ASP A.249 HOH A.522 HOH A.736 IPM A.401
3WZW-MG-2D2 ASP A.225 ASP A.249 HOH A.522 HOH A.736 IPM A.401
3WZX-MG-1D2 ASP A.225 ASP A.249 HOH A.685 HOH A.700 IPM A.401
3WZX-MG-2D2 ASP A.225 ASP A.249 HOH A.685 HOH A.700 IPM A.401
3WZY-MG-2D2 ASP A.225 ASP A.249 HOH A.818 HOH A.824 IPM A.401
4IWH-MG-1D3 ASP A.246 ASP A.250 ASP B.222 HOH A.660 HOH A.733 HOH B.559
4IWH-MG-2D3 ASP A.222 ASP B.246 ASP B.250 HOH A.734 HOH B.672 HOH B.757 HOH B.759
5J34-MG-1D3 ASP A.288 ASP A.292 ASP C.264 HOH A.691 HOH A.714 HOH A.778
5J34-MG-2D3 ASP A.264 ASP C.288 ASP C.292 HOH C.644 HOH C.656 HOH C.789