Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with actinonin (crystallized in PEG-550-MME)

PDB ID: 3PN4
Metal site ID: 3PN4-ZN-2
Bound amino acids or nucleotide residues: D2E1
Group identifier: D2E1F1Y1
Is homomeric: True
Amino acid or nucleotide residue IDs: ASP A.30 ASP A.34 GLU A.69
All ligands IDs: ASP A.30 ASP A.34 GLU A.69
Number of coordinating amino acids or nucleotide residues: 3
Number of coordinating ligands: 3
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 3PN3-ZN-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
3PN2-ZN-1D2E1 ASP A.30 ASP A.34 GLU A.69
3PN2-ZN-2D2E1 ASP A.30 ASP A.34 GLU A.69
3PN3-ZN-3D2E1 ASP B.30 ASP B.34 GLU A.69 HOH B.1330
3PN4-ZN-1D2E1 ASP A.30 ASP A.34 GLU A.69
3PN4-ZN-2D2E1 ASP A.30 ASP A.34 GLU A.69
3PN5-ZN-1D2E1 ASP A.30 ASP A.34 GLU A.69
3PN5-ZN-2D2E1 ASP A.30 ASP A.34 GLU A.69
3PN6-ZN-1D2E1 ASP A.30 ASP A.34 GLU B.69 HOH A.484
3PN6-ZN-3D2E1 ASP B.30 ASP B.34 GLU A.69 HOH B.487