Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and an inhibitor methylmalonate

PDB ID: 3W8D
Metal site ID: 3W8D-NA-2
Bound amino acids or nucleotide residues: R2
Group identifier: R2
Is homomeric: True
Amino acid or nucleotide residue IDs: ARG A.260
All ligands IDs: ARG A.260 HOH A.476 HOH A.705
Number of coordinating amino acids or nucleotide residues: 2
Number of coordinating ligands: 6
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 3W8F-NA-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
3W8D-NA-1R2 ARG A.260 HOH A.476 HOH A.705
3W8D-NA-2R2 ARG A.260 HOH A.476 HOH A.705
3W8E-NA-1R2 ARG A.260 HOH A.427 HOH A.430
3W8E-NA-2R2 ARG A.260 HOH A.427 HOH A.430
3W8F-NA-2R2 ARG A.260 HOH A.434 HOH A.454
5B4T-NA-1R2 ARG A.260 HOH A.429 HOH A.437
5B4U-NA-1R2 ARG A.260 HOH A.426 HOH A.468
5B4U-NA-2R2 ARG A.260 HOH A.426 HOH A.468
5B4V-NA-1R2 ARG A.260 HOH A.424 HOH A.432
5B4V-NA-2R2 ARG A.260 HOH A.424 HOH A.432