Crystal structure of NDM-1 bound to hydrolyzed benzylpenicillin

PDB ID: 4EYF
Metal site ID: 4EYF-ZN-1
Bound amino acids or nucleotide residues: D1E2
Group identifier: H2
Is homomeric: True
Amino acid or nucleotide residue IDs: ASP A.223 GLU A.152 GLU B.227
All ligands IDs: ASP A.223 GLU A.152 GLU B.227 HOH A.475
Number of coordinating amino acids or nucleotide residues: 3
Number of coordinating ligands: 4
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 4HL2-ZN-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
4EY2-ZN-1D1E2 ASP B.223 GLU A.227 GLU B.152 HOH B.612
4EYF-ZN-1D1E2 ASP A.223 GLU A.152 GLU B.227 HOH A.475
4EYF-ZN-2D1E2 ASP B.223 GLU A.227 GLU B.152 HOH B.488
5ZR8-ZN-1D1E2 ASP A.223 GLU A.152 GLU E.227
5ZR8-ZN-2D1E2 ASP E.223 GLU A.227 GLU E.152 HOH E.548
6KXI-ZN-1D1E2 ASP B.223 GLU A.227 GLU B.152
6KZL-ZN-1D1E2 ASP B.223 GLU A.227 GLU B.152
6MGX-ZN-1D1E2 ASP A.223 GLU A.152 GLU B.227 HOH A.407
6MGX-ZN-2D1E2 ASP B.223 GLU A.227 GLU B.152 HOH A.421