Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dCTP soaked with MgCl2 for 1hr

PDB ID: 4RQ1
Metal site ID: 4RQ1-NA-1
Bound amino acids or nucleotide residues: G1I1T1V1
Group identifier: G2I1R1S1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DG P.9 ILE A.106 THR A.101 VAL A.103
All ligands IDs: DG P.9 HOH A.502 ILE A.106 THR A.101 VAL A.103
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 5
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 4KLI-NA-2
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
2P66-NA-1G1I1T1V1 DG C.9 HOH C.344 HOH C.347 ILE A.106 THR A.101 VAL A.103
3RJJ-NA-1G1I1T1V1 DG P.9 HOH A.342 HOH P.26 ILE A.106 THR A.101 VAL A.103
4F5N-NA-1G1I1T1V1 HOH A.502 HOH A.517 HOH A.819 HOH P.101 THR A.101
4KLG-NA-2G1I1T1V1 ASP A.190 ASP A.192 ASP A.256 DC P.10 DC P.11
4KLJ-NA-1G1I1T1V1 DG P.9 HOH A.799 HOH P.203 ILE A.106 THR A.101 VAL A.103
4KLL-NA-2G1I1T1V1 DC D.3 HOH A.595 HOH D.103 LEU A.62 LYS A.60 VAL A.65
4KLM-NA-2G1I1T1V1 DG P.9 HOH A.548 HOH P.102 ILE A.106 THR A.101 VAL A.103
4KLO-NA-3G1I1T1V1 DG P.9 HOH A.837 HOH P.202 ILE A.106 THR A.101 VAL A.103
4M9G-NA-2G1I1T1V1 DG P.9 HOH A.513 HOH P.105 ILE A.106 THR A.101 VAL A.103
4PPX-NA-2G1I1T1V1 DG P.9 HOH A.521 HOH P.101 ILE A.106 THR A.101 VAL A.103
4R63-NA-1G1I1T1V1 DG P.9 HOH A.503 HOH P.101 ILE A.106 THR A.101 VAL A.103
4R64-NA-1G1I1T1V1 DG P.9 HOH A.641 HOH P.119 ILE A.106 THR A.101 VAL A.103
4RQ1-NA-1G1I1T1V1 DG P.9 HOH A.502 ILE A.106 THR A.101 VAL A.103
5BOL-NA-1G1I1T1V1 DG P.9 HOH A.721 HOH P.501 ILE A.106 THR A.101 VAL A.103
5BOM-NA-1G1I1T1V1 DG P.9 HOH A.661 HOH P.105 ILE A.106 THR A.101 VAL A.103
5J0P-NA-1G1I1T1V1 DG P.9 HOH A.566 HOH P.103 ILE A.106 THR A.101 VAL A.103
5J0W-NA-1G1I1T1V1 DG P.9 HOH A.628 HOH P.107 ILE A.106 THR A.101 VAL A.103
5J2A-NA-1G1I1T1 DG P.9 HOH A.551 ILE A.106 THR A.101
5J2D-NA-1G1I1T1V1 DG P.9 HOH A.728 HOH P.110 ILE A.106 THR A.101 VAL A.103
5J2I-NA-1G1I1T1V1 DG P.9 HOH A.661 HOH P.106 ILE A.106 THR A.101 VAL A.103
5TBA-NA-1G1I1T1V1 DG P.9 HOH A.538 HOH P.103 ILE A.106 THR A.101 VAL A.103
5TBC-NA-1G1I1T1V1 DG P.9 HOH A.561 HOH A.572 ILE A.106 THR A.101 VAL A.103
5U8H-NA-2G1I1T1V1 DG P.9 HOH A.637 HOH P.118 ILE A.106 THR A.101 VAL A.103
5U8I-NA-2G1I1T1V1 DG P.9 HOH A.547 HOH P.104 ILE A.106 THR A.101 VAL A.103
6BTE-NA-1G1I1T1V1 DG P.9 HOH A.758 HOH P.106 ILE A.106 THR A.101 VAL A.103
6CRB-NA-1G1I1T1V1 DG P.9 HOH A.611 HOH P.103 ILE A.106 THR A.101 VAL A.103
6N2T-NA-1G1I1T1V1 DG P.9 HOH A.536 HOH P.102 ILE A.106 THR A.101 VAL A.103
7RBE-NA-1G1I1T1V1 DG P.9 HOH A.716 HOH P.115 ILE A.106 THR A.101 VAL A.103
7RBG-CA-2G1I1T1V1 DG P.9 HOH A.668 HOH P.102 ILE A.106 THR A.101 VAL A.103