Ternary complex crystal structure of DNA polymerase Beta with C:A mismatch at the primer terminus

PDB ID: 5J2C
Metal site ID: 5J2C-NA-2
Bound amino acids or nucleotide residues: C1K1L1V1
Group identifier: G2K1L1P1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DC D.3 LEU A.62 LYS A.60 VAL A.65
All ligands IDs: DC D.3 HOH A.608 HOH D.105 LEU A.62 LYS A.60 VAL A.65
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 6
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 4KLI-NA-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
1BPY-NA-2C1K1L1V1 DC D.3 HOH D.587 HOH D.588 LEU A.62 LYS A.60 VAL A.65
1BPZ-NA-2C1K1L1V1 DC D.3 HOH A.502 LEU A.62 LYS A.60 VAL A.65
1ZJM-NA-2C1K1L1V1 DG P.9 HOH P.904 HOH P.921 ILE A.106 THR A.101 VAL A.103
4F5N-NA-2C1K1L1V1 DG P.9 HOH A.502 HOH P.101 ILE A.106 THR A.101 VAL A.103
4KLF-NA-2C1K1L1V1 DC D.3 HOH A.632 HOH D.101 LEU A.62 LYS A.60 VAL A.65
4KLG-NA-3C1K1L1V1 DG P.9 HOH P.203 HOH P.223 ILE A.106 THR A.101 VAL A.103
4KLJ-NA-3C1K1L1V1 DC D.3 HOH A.596 HOH D.103 LEU A.62 LYS A.60 VAL A.65
4KLM-NA-1C1K1L1V1 DC D.3 HOH A.667 HOH D.103 LEU A.62 LYS A.60 VAL A.65
4KLO-NA-2C1K1L1V1 DC D.3 HOH A.635 HOH D.104 LEU A.62 LYS A.60 VAL A.65
4M2Y-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
4O9M-NA-2C1K1L1V1 DC D.3 HOH A.632 HOH D.111 LEU A.62 LYS A.60 VAL A.65
4PGY-NA-2C1K1L1V1 DC D.3 HOH D.106 LEU A.62 LYS A.60 VAL A.65
4PPX-NA-1C1K1L1V1 DC D.3 HOH A.566 HOH D.102 LEU A.62 LYS A.60 VAL A.65
4R64-NA-2C1K1L1V1 DC D.3 HOH A.536 HOH D.106 LEU A.62 LYS A.60 VAL A.65
4RQ1-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
4RQ7-NA-2C1K1L1V1 DC D.3 HOH A.549 HOH D.202 LEU A.62 LYS A.60 VAL A.65
5BOM-NA-2C1K1L1V1 DC D.3 HOH A.665 HOH D.107 LEU A.62 LYS A.60 VAL A.65
5DBA-NA-2C1K1L1V1 DC D.3 HOH A.572 HOH D.107 LEU A.62 LYS A.60 VAL A.65
5DBC-NA-2C1K1L1V1 DC D.3 HOH D.103 LEU A.62 LYS A.60 VAL A.65
5J0O-NA-2C1K1L1V1 DC D.3 HOH A.710 HOH D.117 LEU A.62 LYS A.60 VAL A.65
5J0W-NA-2C1K1L1V1 DC D.3 HOH A.515 HOH D.104 LEU A.62 LYS A.60 VAL A.65
5J29-NA-2C1K1L1V1 DC D.3 HOH A.605 LEU A.62 LYS A.60 VAL A.65
5J2B-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
5J2C-NA-2C1K1L1V1 DC D.3 HOH A.608 HOH D.105 LEU A.62 LYS A.60 VAL A.65
5J2E-NA-2C1K1L1V1 DC D.3 HOH A.648 HOH D.102 LEU A.62 LYS A.60 VAL A.65
5J2G-NA-2C1K1L1V1 DC D.3 HOH A.562 LEU A.62 LYS A.60 VAL A.65
5J2I-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
5J2K-NA-2C1K1L1V1 DC D.3 HOH A.592 LEU A.62 LYS A.60 VAL A.65
5TBA-NA-2C1K1L1V1 DC D.3 HOH D.101 LEU A.62 LYS A.60 VAL A.65
5TZV-NA-2C1K1L1V1 DC D.3 HOH A.811 HOH D.116 LEU A.62 LYS A.60 VAL A.65
5U8H-NA-1C1K1L1V1 DC D.3 HOH A.621 HOH D.101 LEU A.62 LYS A.60 VAL A.65
5V1O-NA-2C1K1L1V1 DC D.3 HOH A.723 HOH D.101 LEU A.62 LYS A.60 VAL A.65
5V1P-NA-2C1K1L1V1 DC D.3 HOH A.688 HOH D.203 LEU A.62 LYS A.60 VAL A.65
5V1R-NA-2C1K1L1V1 DC D.3 HOH D.106 LEU A.62 LYS A.60 VAL A.65
5VEZ-NA-2C1K1L1V1 DC D.3 HOH D.103 HOH D.106 LEU A.62 LYS A.60 VAL A.65
5VRZ-NA-1C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
5VS0-MG-4C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6BEL-NA-2C1K1L1V1 DC D.3 HOH A.782 HOH D.105 LEU A.62 LYS A.60 VAL A.65
6CPQ-NA-2C1K1L1V1 DC D.3 HOH A.748 HOH D.101 LEU A.62 LYS A.60 VAL A.65
6CR5-NA-2C1K1L1V1 DC D.3 HOH A.571 HOH D.102 LEU A.62 LYS A.60 VAL A.65
6CR8-NA-2C1K1L1V1 DC D.3 HOH A.615 HOH D.103 LEU A.62 LYS A.60 VAL A.65
6CR9-NA-2C1K1L1V1 DC D.3 HOH A.775 HOH D.106 LEU A.62 LYS A.60 VAL A.65
6NKY-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6PH5-NA-1C1K1L1V1 DC D.3 HOH A.522 HOH A.533 LEU A.62 LYS A.60 VAL A.65
7S9K-NA-2C1K1L1V1 DC D.3 HOH A.693 HOH D.110 LEU A.62 LYS A.60 VAL A.65
7S9L-NA-2C1K1L1V1 DC D.3 HOH D.108 LEU A.62 LYS A.60 VAL A.65