Ternary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus

PDB ID: 5J2G
Metal site ID: 5J2G-NA-1
Bound amino acids or nucleotide residues: G1I1T1V1
Group identifier: C1G1I1L1R1T1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DG P.9 ILE A.106 THR A.101 VAL A.103
All ligands IDs: DG P.9 HOH P.106 HOH P.120 ILE A.106 THR A.101 VAL A.103
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 6
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 2BPG-MG-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
1BPX-NA-2G1I1T1V1 DG P.9 HOH A.500 HOH P.501 ILE A.106 THR A.101 VAL A.103
3C2M-NA-1G1I1T1V1 DG P.9 HOH A.378 HOH P.360 ILE A.106 THR A.101 VAL A.103
3ISB-NA-1G1I1T1V1 DG P.9 HOH P.11 HOH P.12 ILE A.106 THR A.101 VAL A.103
3ISC-NA-1G1I1T1V1 DG P.9 HOH A.507 HOH P.11 ILE A.106 THR A.101 VAL A.103
4GXJ-NA-1G1I1T1V1 DG P.9 HOH A.504 HOH P.202 ILE A.106 THR A.101 VAL A.103
4KLF-NA-1G1I1T1V1 DG P.9 HOH P.107 HOH P.124 ILE A.106 THR A.101 VAL A.103
4NM2-NA-1G1I1T1V1 DG P.9 ILE A.106 THR A.101 VAL A.103
4O9M-NA-1G1I1T1V1 DG C.9 HOH C.101 HOH C.104 ILE A.106 THR A.101 VAL A.103
4RQ7-NA-1G1I1T1V1 DG P.9 HOH P.201 HOH P.202 ILE A.106 THR A.101 VAL A.103
5J0T-NA-1G1I1T1V1 DG P.9 HOH A.740 HOH P.113 ILE A.106 THR A.101 VAL A.103
5J2H-NA-1G1I1T1V1 DG P.9 HOH P.106 ILE A.106 THR A.101 VAL A.103
5TZV-NA-1G1I1T1V1 DG P.9 HOH A.805 HOH P.116 ILE A.106 THR A.101 VAL A.103
5U8G-NA-2G1I1T1V1 DG P.9 HOH A.644 HOH P.117 ILE A.106 THR A.101 VAL A.103
6CLY-NA-1G1I1T1V1 DG P.9 HOH P.111 ILE A.106 THR A.101 VAL A.103
6N2R-NA-1G1I1T1V1 DG P.9 HOH A.657 HOH P.108 ILE A.106 THR A.101 VAL A.103
6NKR-NA-1G1I1T1V1 DG P.9 HOH A.532 ILE A.106 THR A.101 VAL A.103
6NKS-NA-1G1I1T1V1 DG P.9 HOH A.528 ILE A.106 THR A.101 VAL A.103
6PH5-NA-2G1I1T1V1 DG P.9 HOH P.106 ILE A.106 THR A.101 VAL A.103
7MZ3-NA-1G1I1T1V1 DG P.9 HOH A.553 HOH P.102 ILE A.106 THR A.101 VAL A.103
7RBM-MN-2G1I1T1V1 DG P.9 HOH A.555 HOH P.201 ILE A.106 THR A.101 VAL A.103