DNA polymerase beta substrate complex with 8-oxoG:C at the primer terminus and incoming dCTP analog

PDB ID: 5V1P
Metal site ID: 5V1P-NA-1
Bound amino acids or nucleotide residues: G1I1T1V1
Group identifier: G2I1R1S1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DG P.9 ILE A.106 THR A.101 VAL A.103
All ligands IDs: DG P.9 HOH A.695 HOH P.504 ILE A.106 THR A.101 VAL A.103
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 6
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 6CR4-NA-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
1BPY-NA-1G1I1T1V1 DG P.9 ILE A.106 THR A.101 VAL A.103
2I9G-NA-1G1I1T1V1 DG P.9 HOH A.512 HOH P.508 ILE A.106 THR A.101 VAL A.103
2ISO-NA-1G1I1T1V1 ASP A.190 ASP A.192 ASP A.256 GFF A.338 HOH P.427
2ISP-NA-1G1I1T1V1 DG P.9 HOH A.562 HOH P.188 ILE A.106 THR A.101 VAL A.103
4DO9-NA-1G1I1T1V1 DG P.9 HOH P.101 ILE A.106 THR A.101 VAL A.103
4DOA-NA-1G1I1T1V1 DG P.9 HOH P.101 ILE A.106 THR A.101 VAL A.103
4DOB-NA-1G1I1T1V1 DG P.9 HOH P.101 ILE A.106 THR A.101 VAL A.103
5V1P-NA-1G1I1T1V1 DG P.9 HOH A.695 HOH P.504 ILE A.106 THR A.101 VAL A.103
5VEZ-NA-1G1I1T1V1 DG P.9 HOH A.682 HOH P.202 ILE A.106 THR A.101 VAL A.103
6BEL-NA-1G1I1T1V1 DG P.9 HOH A.810 HOH P.104 ILE A.106 THR A.101 VAL A.103
6CR3-NA-1G1I1T1V1 DG P.9 HOH A.803 HOH P.106 ILE A.106 THR A.101 VAL A.103
6CR5-NA-1G1I1T1V1 DG P.9 HOH P.102 HOH P.110 ILE A.106 THR A.101 VAL A.103
6CR6-NA-1G1I1T1V1 DG P.9 HOH P.206 HOH P.211 ILE A.106 THR A.101 VAL A.103
6CR7-NA-1G1I1T1V1 DG P.9 HOH P.110 ILE A.106 THR A.101 VAL A.103
6CR8-NA-1G1I1T1V1 DG P.9 HOH A.709 HOH P.106 ILE A.106 THR A.101 VAL A.103
6CR9-NA-1G1I1T1V1 DG P.9 HOH A.771 HOH P.106 ILE A.106 THR A.101 VAL A.103
6CRC-NA-1G1I1T1V1 DG P.9 ILE A.106 THR A.101 VAL A.103
6NKT-NA-1G1I1T1V1 DG P.9 HOH A.530 ILE A.106 THR A.101 VAL A.103