Crystal structure of EXD2 exonuclease domain soaked in Mn and GMP

PDB ID: 6K1D
Metal site ID: 6K1D-MN-1
Bound amino acids or nucleotide residues: D2E1
Group identifier: C1D2E1Y1
Is homomeric: True
Amino acid or nucleotide residue IDs: ASP A.108 ASP B.246 GLU A.110
All ligands IDs: ASP A.108 ASP B.246 GLU A.110 HOH A.405 HOH B.407
Number of coordinating amino acids or nucleotide residues: 3
Number of coordinating ligands: 5
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 6K18-MN-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
6K18-MN-2D2E1 ASP A.246 ASP B.108 GLU B.110 HOH A.407 HOH B.317 HOH B.395
6K1B-MN-1D2E1 ASP A.108 ASP B.246 GLU A.110 HOH A.409 HOH A.433 HOH B.422
6K1B-MN-2D2E1 ASP A.246 ASP B.108 GLU B.110 HOH A.414 HOH B.410 HOH B.434
6K1D-MN-1D2E1 ASP A.108 ASP B.246 GLU A.110 HOH A.405 HOH B.407
6K1D-MN-2D2E1 ASP A.246 ASP B.108 GLU B.110 HOH B.403 HOH B.404