Ternary complex crystal structure of K289M variant of DNA polymerase Beta with "hot-spot sequence" with dGTP

PDB ID: 6NKX
Metal site ID: 6NKX-NA-1
Bound amino acids or nucleotide residues: I1T2V1
Group identifier: G2I1R1S1T1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DT P.9 ILE A.106 THR A.101 VAL A.103
All ligands IDs: DT P.9 HOH A.695 HOH P.205 ILE A.106 THR A.101 VAL A.103
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 6
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 4GXI-NA-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
1MQ2-NA-1G1I1T1V1 DG P.9 HOH A.344 HOH A.345 ILE A.106 THR A.101 VAL A.103
4M9H-NA-2G1I1T1V1 DG P.9 HOH A.510 HOH P.101 ILE A.106 THR A.101 VAL A.103
5DBB-NA-1G1I1T1V1 DG P.9 HOH A.607 HOH P.104 ILE A.106 THR A.101 VAL A.103
5EOZ-NA-1G1I1T1V1 DG P.9 HOH A.646 ILE A.106 THR A.101 VAL A.103
6NKW-NA-1I1T2V1 DT P.9 HOH A.773 HOH P.205 ILE A.106 THR A.101 VAL A.103
6NKX-NA-1I1T2V1 DT P.9 HOH A.695 HOH P.205 ILE A.106 THR A.101 VAL A.103
6NKY-NA-1I1T2V1 DT P.9 HOH P.101 ILE A.106 THR A.101 VAL A.103
7S9M-NA-1G1I1T1V1 DG P.9 HOH A.518 HOH P.206 ILE A.106 THR A.101 VAL A.103
7S9O-NA-1G1I1T1V1 DG P.9 HOH P.105 ILE A.106 THR A.101 VAL A.103