Structure of New Jersey Polyomavirus VP1 in complex with 3'-Sialyllactose

PDB ID: 6Y5Y
Metal site ID: 6Y5Y-MG-1
Bound amino acids or nucleotide residues: E1S1
Group identifier: K1R1
Is homomeric: True
Amino acid or nucleotide residue IDs: GLU A.53 SER B.237
All ligands IDs: GLU A.53 HOH A.700 HOH B.605 HOH B.720 SER B.237
Number of coordinating amino acids or nucleotide residues: 2
Number of coordinating ligands: 5
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 6Y64-MG-2
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
4X12-K-1E1T1 GLU A.40 HOH B.475 HOH B.574 THR B.205
4X12-K-3E2T1 GLU B.40 GLU C.208 HOH B.437 HOH C.455 HOH C.492 THR C.205
4X16-K-1E1T1 GLU A.40 HOH A.459 HOH B.541 THR B.205
4X17-K-2E1T1 GLU D.40 HOH D.501 HOH E.498 HOH E.594 THR E.205
6Y5X-MG-2E1S1 GLU E.53 HOH A.574 HOH E.569 HOH E.581 SER A.237
6Y5X-MG-3E2S1 GLU C.53 GLU D.240 HOH D.567 SER D.237
6Y5X-MG-4E2S1 GLU D.53 GLU E.240 HOH D.600 HOH E.558 HOH E.603 SER E.237
6Y5Y-MG-1E1S1 GLU A.53 HOH A.700 HOH B.605 HOH B.720 SER B.237
6Y5Y-MG-2E1S1 GLU E.53 HOH A.662 HOH A.708 SER A.237
6Y5Y-MG-3E1S1 GLU B.53 HOH B.666 HOH C.594 HOH C.717 SER C.237
6Y63-MG-2E1F1 GLU JJJ.38 HOH JJJ.506 PHE FFF.207
6Y63-MG-3E2F1 GLU GGG.38 GLU HHH.210 HOH GGG.429 PHE HHH.207
6Y63-MG-4E1F1 GLU HHH.38 HOH HHH.438 HOH HHH.600 PHE III.207
6Y63-MG-5E1F1 GLU III.38 HOH JJJ.589 PHE JJJ.207
6Y64-MG-3E2F1 GLU G.38 GLU H.210 HOH G.556 HOH G.587 HOH H.667 PHE H.207
6Y64-MG-4E1F1 GLU H.38 HOH H.501 HOH H.728 HOH I.738 HOH I.742 PHE I.207
6Y9I-MG-2E2S1 GLU AAA.53 GLU BBB.240 HOH AAA.597 HOH AAA.598 HOH BBB.588 SER BBB.237
6Y9I-MG-4E2S1 GLU BBB.53 GLU CCC.240 HOH BBB.516 HOH BBB.679 HOH CCC.575 SER CCC.237
6Y9I-MG-9E1S1 GLU DDD.53 HOH DDD.565 HOH DDD.586 HOH DDD.651 SER EEE.237
7B6V-MG-2E1F1 GLU BBB.38 HOH BBB.599 PHE CCC.207