Structure of New Jersey Polyomavirus VP1 in complex with 3'-Sialyllactose

PDB ID: 6Y5Y
Metal site ID: 6Y5Y-MG-4
Bound amino acids or nucleotide residues: E1S1
Group identifier: R1
Is homomeric: True
Amino acid or nucleotide residue IDs: GLU D.53 SER E.237
All ligands IDs: HOH C.743 HOH D.667 HOH D.708 SER D.237
Number of coordinating amino acids or nucleotide residues: 2
Number of coordinating ligands: 4
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 4X16-K-2
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
4X0Z-K-1E2T1 GLU A.208 GLU E.40 HOH A.556 HOH A.560 HOH A.608 HOH E.620 THR A.205
4X0Z-K-2E2T1 GLU A.40 GLU B.208 HOH B.458 HOH B.537 HOH B.581 HOH B.602 THR B.205
4X0Z-K-3E2T1 GLU B.40 GLU C.208 HOH B.609 HOH B.613 HOH C.486 HOH C.573 THR C.205
4X0Z-K-4E2T1 GLU C.40 GLU D.208 HOH D.484 HOH D.574 HOH D.616 HOH D.622 THR D.205
4X0Z-K-5E2T1 GLU D.40 GLU E.208 HOH D.623 HOH E.509 HOH E.517 HOH E.621 THR E.205
4X10-K-1E1T1 GLU E.40 HOH A.486 HOH A.523 HOH A.530 HOH A.593 THR A.205
4X10-K-2E1T1 GLU D.40 HOH E.449 HOH E.480 HOH E.491 HOH E.510 HOH E.574 THR E.205
4X11-K-1E1T1 GLU C.40 HOH D.422 HOH D.491 THR D.205
4X12-K-2E1T1 GLU E.40 HOH A.558 HOH A.575 HOH E.468 THR A.205
4X12-K-4E1T1 GLU C.40 HOH D.493 HOH D.507 HOH D.582 THR D.205
4X12-K-5E1T1 GLU D.40 HOH E.504 THR E.205
4X14-K-1E2T1 GLU A.40 GLU B.208 HOH A.516 HOH B.492 THR B.205
4X14-K-2E2T1 GLU A.208 GLU E.40 HOH A.493 HOH A.507 HOH A.510 HOH A.515 THR A.205
4X14-K-3E1T1 GLU B.40 HOH B.524 HOH C.474 THR C.205
4X14-K-4E2T1 GLU C.40 GLU D.208 HOH D.522 HOH D.619 THR D.205
4X14-K-5E2T1 GLU D.40 GLU E.208 HOH E.489 HOH E.501 THR E.205
4X15-K-1E2T1 GLU A.208 GLU E.40 HOH A.522 HOH A.562 HOH E.564 THR A.205
4X15-K-2E2T1 GLU D.40 GLU E.208 HOH E.428 HOH E.507 THR E.205
6Y5Y-MG-4E1S1 HOH C.743 HOH D.667 HOH D.708 SER D.237
6Y9I-MG-6E1S1 GLU CCC.53 HOH CCC.646 HOH DDD.570 SER DDD.237