Crystal structure of the D116N mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0

PDB ID: 6YBZ
Metal site ID: 6YBZ-NA-5
Bound amino acids or nucleotide residues: D1F1T1Y1
Group identifier: F1S1T1
Is homomeric: True
Amino acid or nucleotide residue IDs: ASP A.102 PHE E.86 THR E.83 TYR E.25
All ligands IDs: ASP A.102 HOH E.426 PHE E.86 THR E.83 TYR E.25
Number of coordinating amino acids or nucleotide residues: 4
Number of coordinating ligands: 5
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 6YC3-NA-1
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
4XTN-NA-3D1F1T1Y1 ASP D.102 HOH C.418 PHE C.86 THR C.83 TYR C.25
4XTN-NA-5D1F1T1Y1 ASP A.102 HOH A.438 HOH E.418 PHE E.86 THR E.83 TYR E.25
4XTO-NA-1D1F1T1Y1 ASP B.102 PHE A.86 THR A.83 TYR A.25
4XTO-NA-3D1F1T1 ASP D.102 PHE C.86 THR C.83
4XTO-NA-4D1F1T1Y1 ASP E.102 PHE D.86 THR D.83 TYR D.25
6REW-NA-2D1F1T1Y1 ASP C.102 HOH B.472 HOH C.478 PHE B.86 THR B.83 TYR B.25
6REW-NA-3D1F1T1Y1 ASP D.102 HOH C.451 HOH D.444 PHE C.86 THR C.83 TYR C.25
6REX-NA-5D1F1T1Y1 ASP A.102 PHE E.86 THR E.83 TYR E.25
6REZ-NA-1D1F1T1Y1 ASP B.102 HOH A.413 PHE A.86 THR A.83 TYR A.25
6REZ-NA-3D1F1T1Y1 ASP D.102 HOH C.421 PHE C.86 THR C.83 TYR C.25
6REZ-NA-4D1F1T1Y1 ASP E.102 HOH D.403 PHE D.86 THR D.83 TYR D.25
6RF0-NA-2D1F1T1Y1 ASP A.102 PHE E.86 THR E.83 TYR E.25
6RF0-NA-4D1F1T1Y1 ASP D.102 PHE C.86 THR C.83 TYR C.25
6RF1-NA-1D1F1T1Y1 ASP B.102 HOH A.421 PHE A.86 THR A.83 TYR A.25
6RF3-NA-3D1F1T1Y1 ASP D.102 HOH C.426 HOH D.435 PHE C.86 THR C.83 TYR C.25
6RF3-NA-4D1F1T1Y1 ASP E.102 HOH D.427 HOH E.460 PHE D.86 THR D.83 TYR D.25
6RF3-NA-5D1F1T1Y1 ASP A.102 HOH A.452 HOH E.447 PHE E.86 THR E.83 TYR E.25
6RF4-NA-2D1F1T1Y1 ASP C.102 HOH B.446 HOH C.445 PHE B.86 THR B.83 TYR B.25
6RF4-NA-4D1F1T1Y1 ASP E.102 HOH D.423 PHE D.86 THR D.83 TYR D.25
6XYT-NA-1D1F1T1Y1 ASP B.102 HOH A.436 HOH B.428 PHE A.86 THR A.83 TYR A.25
6XYT-NA-2D1F1T1Y1 ASP C.102 HOH B.424 HOH C.412 PHE B.86 THR B.83 TYR B.25
6XYT-NA-3D1F1T1Y1 ASP D.102 HOH C.429 HOH D.521 PHE C.86 THR C.83 TYR C.25
6XYT-NA-4D1F1T1Y1 ASP E.102 HOH D.545 HOH E.420 PHE D.86 THR D.83 TYR D.25
6XYT-NA-5D1F1T1Y1 ASP A.102 HOH A.409 HOH E.415 PHE E.86 THR E.83 TYR E.25
6YBZ-NA-1D1F1T1Y1 ASP B.102 HOH A.433 PHE A.86 THR A.83 TYR A.25
6YBZ-NA-2D1F1T1Y1 ASP C.102 HOH B.427 PHE B.86 THR B.83 TYR B.25
6YBZ-NA-4D1F1T1Y1 ASP E.102 HOH D.423 PHE D.86 THR D.83 TYR D.25
6YBZ-NA-5D1F1T1Y1 ASP A.102 HOH E.426 PHE E.86 THR E.83 TYR E.25
6YC0-NA-2D1F1T1Y1 ASP C.102 HOH B.443 PHE B.86 THR B.83 TYR B.25
6YC0-NA-3D1F1T1Y1 ASP D.102 HOH D.436 PHE C.86 THR C.83 TYR C.25
6YC0-NA-4D1F1T1Y1 ASP E.102 HOH D.437 PHE D.86 THR D.83 TYR D.25
6YC0-NA-5D1F1T1Y1 ASP A.102 HOH E.537 PHE E.86 THR E.83 TYR E.25
6YC1-NA-1D1F1T1Y1 ASP B.102 HOH A.444 HOH B.473 PHE A.86 THR A.83 TYR A.25
6YC1-NA-3D1F1T1Y1 ASP D.102 HOH C.447 HOH D.459 PHE C.86 THR C.83 TYR C.25
6YC1-NA-4D1F1T1Y1 ASP E.102 HOH D.453 PHE D.86 THR D.83 TYR D.25
6YC2-NA-1D1F1T1Y1 ASP B.102 HOH A.436 PHE A.86 THR A.83 TYR A.25
6YC2-NA-3D1F1T1Y1 ASP D.102 HOH C.441 PHE C.86 THR C.83 TYR C.25
6YC2-NA-4D1F1T1Y1 ASP E.102 HOH D.636 PHE D.86 THR D.83 TYR D.25
6YC3-NA-2D1F1T1Y1 HOH A.451 HOH A.497 HOH A.515 HOH E.479 HOH E.517 SER A.100
6YC3-NA-3D1F1T1Y1 ASP C.102 HOH B.490 HOH C.456 PHE B.86 THR B.83 TYR B.25
6YC3-NA-4D1F1T1Y1 HOH A.473 HOH A.489 HOH B.473 HOH B.485 HOH B.502 SER B.100
6YC4-NA-1D1F1T1Y1 ASP B.102 HOH A.434 PHE A.86 THR A.83 TYR A.25
6YC4-NA-2D1F1T1Y1 ASP C.102 HOH B.432 PHE B.86 THR B.83 TYR B.25
6YC4-NA-3D1F1T1Y1 ASP D.102 HOH D.441 PHE C.86 THR C.83 TYR C.25
6YC4-NA-4D1F1T1Y1 ASP E.102 HOH D.426 PHE D.86 THR D.83 TYR D.25
6YC4-NA-5D1F1T1Y1 ASP A.102 HOH E.438 PHE E.86 THR E.83 TYR E.25
6YT4-NA-2D1F1T1Y1 ASP A.102 HOH A.433 HOH B.442 PHE B.86 THR B.83 TYR B.25
6YT4-NA-3D1F1T1Y1 ASP C.102 HOH C.1539 HOH D.537 PHE D.86 THR D.83 TYR D.25
6YT4-NA-4D1F1T1Y1 ASP D.102 HOH E.545 PHE E.86 THR E.83 TYR E.25
6YT4-NA-5D1F1T1Y1 ASP B.102 HOH C.1531 PHE C.86 THR C.83 TYR C.25