Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA

PDB ID: 7MZ3
Metal site ID: 7MZ3-NA-2
Bound amino acids or nucleotide residues: C1K1V1
Group identifier: G2K2L1P1V1
Is homomeric: False
Amino acid or nucleotide residue IDs: DC D.3 LYS A.60 VAL A.65
All ligands IDs: DC D.3 LYS A.60 VAL A.65
Number of coordinating amino acids or nucleotide residues: 3
Number of coordinating ligands: 3
Number of coordinating chains: 2
Number of coordinating chains: 2
Representative metal site in the group: 6BTF-NA-2
Similar binding_sites:
Metal site idBound amino acidsBound ligands IDs
2ISO-NA-2C1K1L1V1 DG P.9 HOH A.436 HOH P.27 ILE A.106 THR A.101 VAL A.103
2ISP-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
3RJE-NA-2C1K1L1V1 DC D.3 HOH A.593 HOH D.26 LEU A.62 LYS A.60 VAL A.65
4DOA-NA-2C1K1L1V1 DC D.3 HOH D.102 LEU A.62 LYS A.60 VAL A.65
4GXI-NA-2C1K1L1V1 HOH A.512 HOH A.535 HOH A.743 HOH A.760 HOH P.101 THR A.101
4M9G-NA-1C1K1L1V1 DC D.3 HOH A.533 HOH D.105 LEU A.62 LYS A.60 VAL A.65
4M9H-NA-1C1K1L1V1 DC D.3 HOH A.596 HOH D.102 LEU A.62 LYS A.60 VAL A.65
4O5C-NA-2C1K1V1 DC D.3 LYS A.60 VAL A.65
4YMM-NA-2C1K1L1V1 DC D.3 HOH D.104 LEU A.62 LYS A.60 VAL A.65
5DB7-NA-2C1K1L1V1 DC D.3 HOH A.544 LEU A.62 LYS A.60 VAL A.65
5EOZ-NA-2C1K1L1V1 DC D.3 HOH A.628 HOH D.102 LEU A.62 LYS A.60 VAL A.65
5J0S-NA-2C1K1L1V1 DC D.3 HOH A.765 HOH D.116 LEU A.62 LYS A.60 VAL A.65
5J0U-NA-2C1K1L1V1 DC D.3 HOH A.597 HOH D.109 LEU A.62 LYS A.60 VAL A.65
5J0X-NA-2C1K1L1V1 DC D.3 HOH A.777 HOH D.119 LEU A.62 LYS A.60 VAL A.65
5J0Y-NA-2C1K1L1V1 DC D.3 HOH A.793 HOH D.116 LEU A.62 LYS A.60 VAL A.65
5J2D-NA-2C1K1L1V1 DC D.3 HOH A.588 LEU A.62 LYS A.60 VAL A.65
5J2H-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
5U8I-NA-1C1K1L1V1 DC D.3 HOH A.537 HOH D.101 LEU A.62 LYS A.60 VAL A.65
5V1I-NA-2C1K1L1V1 DC D.3 HOH A.676 HOH D.103 LEU A.62 LYS A.60 VAL A.65
6BEM-NA-2C1K1L1V1 DC D.3 HOH A.784 HOH D.206 LEU A.62 LYS A.60 VAL A.65
6CLY-NA-2C1K1L1V1 DC D.3 HOH A.564 HOH D.107 LEU A.62 LYS A.60 VAL A.65
6CR4-NA-2C1K1L1V1 DC D.3 HOH A.754 HOH D.102 LEU A.62 LYS A.60 VAL A.65
6CR6-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6CR7-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6CRB-NA-2C1K1L1V1 DC D.3 HOH A.510 HOH A.597 LEU A.62 LYS A.60 VAL A.65
6E3R-NA-2C1K1L1V1 DC D.3 HOH A.547 HOH D.105 LEU A.62 LYS A.60 VAL A.65
6N2S-NA-1C1K1L1V1 DC D.3 HOH D.103 LEU A.62 LYS A.60 VAL A.65
6NKR-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6NKT-NA-2C1K1L1V1 DC D.3 LEU A.62 LYS A.60 VAL A.65
6PKZ-NA-2C1K1V1 DC D.3 LYS A.60 VAL A.65
7MZ3-NA-2C1K1V1 DC D.3 LYS A.60 VAL A.65
7RBG-CA-1C1K1L1V1 DC D.3 HOH A.638 HOH D.102 LEU A.62 LYS A.60 VAL A.65
7S9J-NA-2C1K1L1V1 DC D.3 HOH A.725 HOH D.114 LEU A.62 LYS A.60 VAL A.65