| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 6S5D-MG-3 | MG | Mg²⁺ | E2 | GLU. | ATP.GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 6S5D-MG-4 | MG | Mg²⁺ | E2 | GLU. | ATP.GLU.HOH. | ✔ | 2 | 6 | 2 | ✘ |
| 6RUR-MG-1 | MG | Mg²⁺ | N1S2T1 | ASN.SER.THR. | ASN.SER.THR. | ✘ | 4 | 4 | 2 | ✔ |
| 6RUR-MG-2 | MG | Mg²⁺ | N1S2T1 | ASN.SER.THR. | ASN.SER.THR. | ✘ | 4 | 4 | 2 | ✔ |
| 6RUV-MG-1 | MG | Mg²⁺ | N1S2T1 | ASN.SER.THR. | ASN.SER.THR. | ✘ | 4 | 4 | 2 | ✘ |
| 6RUV-MG-2 | MG | Mg²⁺ | N1S2T1 | ASN.SER.THR. | ASN.SER.THR. | ✘ | 4 | 4 | 2 | ✔ |
| 6RUP-MG-1 | MG | Mg²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 6S85-MN-1 | MN | Mn²⁺ | D2G1 | ASP.DG. | ASP.DG. | ✘ | 3 | 3 | 2 | ✔ |
| 6SAG-CA-1 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✔ |
| 6SAG-CA-2 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-3 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-4 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-5 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-6 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-7 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-8 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-9 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-10 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✔ |
| 6SAG-CA-11 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |
| 6SAG-CA-12 | CA | Ca²⁺ | E1N2P1 | ASN.GLU.PRO. | ASN.GLU.HOH.PRO. | ✔ | 4 | 6 | 2 | ✘ |