| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 4OX5-ZN-1 | ZN | Zn²⁺ | H2 | HIS. | GLU.HOH. | ✔ | 2 | 2 | 2 | ✔ |
| 4R1L-K-1 | K | K⁺ | G2K2 | GLY.LYS. | GLY.HOH.LYS. | ✔ | 4 | 5 | 2 | ✘ |
| 4R1L-K-2 | K | K⁺ | G2K2 | GLY.LYS. | GLY.LYS. | ✔ | 4 | 4 | 2 | ✘ |
| 4R1L-K-3 | K | K⁺ | G2K2 | GLY.LYS. | GLY.HOH.LYS. | ✔ | 4 | 5 | 2 | ✘ |
| 4R1L-K-4 | K | K⁺ | G2K2 | GLY.LYS. | GLY.HOH.LYS. | ✔ | 4 | 5 | 2 | ✔ |
| 4R1M-NA-1 | NA | Na⁺ | G2K2R1 | ARG.GLY.LYS. | ARG.GLY.LYS. | ✔ | 5 | 5 | 2 | ✔ |
| 4R1M-NA-2 | NA | Na⁺ | G2K1 | GLY.LYS. | GLY.HOH.LYS. | ✔ | 3 | 5 | 2 | ✘ |
| 4QQR-ZN-1 | ZN | Zn²⁺ | E2 | GLU. | GLU. | ✔ | 2 | 2 | 2 | ✔ |
| 4R2Y-ZN-1 | ZN | Zn²⁺ | C3 | CYS. | CYS. | ✔ | 3 | 3 | 2 | ✔ |
| 4QVU-NA-1 | NA | Na⁺ | D1L1V1 | ASP.LEU.VAL. | ASP.HOH.LEU.VAL. | ✔ | 3 | 4 | 2 | ✔ |
| 4QVU-NA-2 | NA | Na⁺ | D1L1V1 | ASP.LEU.VAL. | ASP.HOH.LEU.VAL. | ✔ | 3 | 4 | 2 | ✔ |
| 4QVU-NA-3 | NA | Na⁺ | D1L1V1 | ASP.LEU.VAL. | ASP.HOH.LEU.VAL. | ✔ | 3 | 4 | 2 | ✘ |
| 4QVU-NA-4 | NA | Na⁺ | D1L1V1 | ASP.LEU.VAL. | ASP.HOH.LEU.VAL. | ✔ | 3 | 4 | 2 | ✘ |
| 4UCH-ZN-1 | ZN | Zn²⁺ | C4 | CYS. | CYS. | ✔ | 4 | 4 | 2 | ✘ |
| 4UEO-ZN-1 | ZN | Zn²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 4UEK-ZN-1 | ZN | Zn²⁺ | H2 | HIS. | HIS. | ✔ | 2 | 2 | 2 | ✔ |
| 4S2T-ZN-1 | ZN | Zn²⁺ | D2E1X1 | 01B.ASP.GLU. | 01B.ASP.GLU. | ✘ | 4 | 4 | 2 | ✔ |
| 4RVN-K-1 | K | K⁺ | G2K2 | GLY.LYS. | GLY.LYS. | ✔ | 4 | 4 | 2 | ✔ |
| 4RVN-K-2 | K | K⁺ | G2K2 | GLY.LYS. | GLY.HOH.LYS. | ✔ | 4 | 5 | 2 | ✔ |
| 4RVO-K-1 | K | K⁺ | G2K2 | GLY.LYS. | GLY.LYS. | ✔ | 4 | 4 | 2 | ✘ |