| Id | Element | Ion | Binding family | Amino acids or nucleotide residues names | All bound residues | Is homomer | Number of bound amino acids or nucleotide residues | Number of all bound residues | Number of coordinating chains | Representative |
|---|---|---|---|---|---|---|---|---|---|---|
| 1P5W-MG-115 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P5W-MG-116 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P5W-MG-117 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P5W-MG-118 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P5W-MG-119 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P5W-MG-120 | MG | Mg²⁺ | D3 | ASP. | ASP. | ✔ | 3 | 3 | 2 | ✘ |
| 1P8K-MG-1 | MG | Mg²⁺ | A2D1T1 | ALA.ASP.DA.DT. | ALA.ASP.DA.DT. | ✘ | 4 | 4 | 3 | ✔ |
| 1P8K-MG-2 | MG | Mg²⁺ | C2E1G1 | DC.GLU.GLY. | DC.GLU.GLY. | ✘ | 4 | 4 | 3 | ✔ |
| 1P8F-MG-1 | MG | Mg²⁺ | D2 | ASP. | ASP.HOH.ICT. | ✔ | 2 | 5 | 2 | ✔ |
| 1P8F-MG-2 | MG | Mg²⁺ | D2 | ASP. | ASP.HOH.ICT. | ✔ | 2 | 5 | 2 | ✘ |
| 1PKG-MG-1 | MG | Mg²⁺ | D1N1X1 | ASN.ASP.PTR. | ADP.ASN.ASP.PTR. | ✔ | 3 | 4 | 2 | ✔ |
| 1PKG-MG-2 | MG | Mg²⁺ | D1N1X1 | ASN.ASP.PTR. | ADP.ASN.ASP.PTR. | ✔ | 3 | 4 | 2 | ✔ |
| 1PKG-MG-3 | MG | Mg²⁺ | D1N1X1 | ASN.ASP.PTR. | ADP.ASN.ASP.PTR. | ✔ | 3 | 4 | 2 | ✔ |
| 1PKG-MG-4 | MG | Mg²⁺ | D1N1X1 | ASN.ASP.PTR. | ADP.ASN.ASP.PTR. | ✔ | 3 | 4 | 2 | ✘ |
| 2BCR-NA-1 | NA | Na⁺ | A2I1S1 | ALA.DA.ILE.SER. | HOH.SER. | ✘ | 4 | 6 | 2 | ✘ |
| 2BCQ-NA-1 | NA | Na⁺ | A2I1S1 | ALA.DA.ILE.SER. | ALA.DA.HOH.ILE.SER. | ✘ | 4 | 6 | 2 | ✔ |
| 2BCV-NA-1 | NA | Na⁺ | A2I1S1 | ALA.DA.ILE.SER. | ALA.DA.HOH.ILE.SER. | ✘ | 4 | 6 | 2 | ✘ |
| 2BCS-NA-1 | NA | Na⁺ | A2I1S1 | ALA.DA.ILE.SER. | ALA.DA.HOH.ILE.SER. | ✘ | 4 | 6 | 2 | ✘ |
| 2C13-K-1 | K | K⁺ | D2L1 | ASP.LEU. | ASP.HOH.LEU. | ✔ | 3 | 5 | 2 | ✘ |
| 2C13-K-2 | K | K⁺ | D2L1 | ASP.LEU. | ASP.HOH.LEU. | ✔ | 3 | 5 | 2 | ✔ |